Manuscripts
2005
 Lynch Alfaro, J. W. Male mating strategies and reproductive constraints in a group of wild tufted capuchin monkeys, Cebus apella nigritus. American Journal of Primatology 67(3): 313-328.
2005
 Gesquiere, L.R., Altmann, J.A., Alberts, S.C., Khan, M.Z., Couret, J., Yu, J.C., Endres, C.S., Lynch, J.W., Ogala, P., Wango, E.  Coming of age: steroid hormones of wild immature baboons, Papio cynocephalus. American Journal of Primatology 67 (1): 83-100.
2004
 Altmann, J., Lynch, J.W., Nguyen, N., Alberts, S.C. and Gesquiere, L.R. Life-history correlates of steroid concentrations in wild peripartum baboons.  American Journal of Primatology 64: 95-106.
2003
 Lynch, J.W., Altmann, J., Njahira, M.N., Rubenstein, N.  Concentrations of four fecal steroids in wild baboons: short-term storage conditions and consequences for data interpretation.  General and Comparative Endocrinology 132: 264-271.
2003
 Good, T., Khan, M.Z., Lynch, J.W. Biochemical and physiological validation of a corticosteroid radioimmunoassay for plasma and fecal samples in oldfield mice (Peromyscus polionotus).  Physiology and Behavior 80: 405-411.
2003
 Strier, K.B., Lynch, J.W., and Ziegler, T.E.  Hormonal changes during the mating and conception seasons of wild northern muriquis (Brachyteles arachnoides hypoxanthus).  American Journal of Primatology 61: 85-99.
2002
 Lynch, J.W., Ziegler, T.E., and Strier, K.B.  Individual and seasonal variation in fecal testosterone and cortisol in wild male tufted capuchin monkeys, Cebus apella nigritus.  Hormones and Behavior 41: 275-287.
2000

Lynch, J.W., and Rímoli, J.  Demography of a group of tufted capuchin monkeys (Cebus apella nigritus) at the Estação Biológica de Caratinga, Minas Gerais, Brazil.  Neotropical Primates  8(1):44-49.
1999 
 Strier, K.B., Mendes, S.L, Bragança, A.M., Coelho, C.C., Costa, C.G., Diaz, L.G., Dib, L.T., Gomes, J, Hirsch, A., Lynch, J.W., Nogueira, C.P., Odalia Rímoli, A., Oliva, A.S., Printes, R.C., Rímoli, J. and Santos, R.R.  Census of the Primate Community at the Estação Biológica de Caratinga, Minas Gerais, Brazil.  Neotropical Primates  7(4):134-5.
Manuscripts Submitted
in review
 Lynch Alfaro, J. W. Subgrouping patterns in a group of wild Cebus apella nigritus. International Journal of Primatology.